The #eye is famously a well-accessible extension of the brain. So why not looking into eyes to find out about brain disorders? For #schizophrenia this may become possible as retinal cells are affected. #genomics #transcriptomics https://jamanetwork.com/journals/jamapsychiatry/fullarticle/2829092

**eLife** @eLife@fediscience.org · Jan 17

Jan 17

eLife @eLife@fediscience.org

A genetic barcoding system lets scientists tag and track cells, making it easier than ever to map gene expression (#transcriptomics) and decode behaviour.
https://elifesciences.org/reviewed-preprints/88334?utm_source=mastodon&utm_medium=social&utm_campaign=organic

cartoon of a fruit fly with a barcode overlaid on its abdomen

**Bytes Europe** @byteseu@pubeurope.com · Jan 6

Jan 6

Bytes Europe @byteseu@pubeurope.com

Phosphorylation of a nuclear condensate regulates cohesion and mRNA retention https://www.byteseu.com/627897/ #HumanitiesAndSocialSciences #multidisciplinary #Nuclear #NuclearSpeckles #Proteomics #RNATransport #Science #SingleCellImaging #Transcriptomics

**Ana Viñuela** @AnaVinuela@mas.to · Jan 6

Jan 6

Ana Viñuela @AnaVinuela@mas.to

Casey Brown was a great scientist and an amazing person. He could always make time to catch up with junior people, give encouragement or just joke about pretty much everything.

Now in his honour some of the leading scientist in #genomics and #complextraits have joint to record the Casey Brown #lectures.

From the basics of human #genetics, to #transcriptomics #epigenetics or #machinelearning for genomics. All free to watch.

https://m.youtube.com/playlist?list=PLlV97eYP56rATGyRK4SSHVXyJjVxPGth_

m.youtube.comBefore you continue to YouTube

**Daniel Hoffmann** @Daniel_Hoffmann@mathstodon.xyz · Dec 30, 2024

Dec 30, 2024

Daniel Hoffmann @Daniel_Hoffmann@mathstodon.xyz

Cancer cells may change their mechanical properties and thus become able to invade other tissues, i.e. to metastasize. This paper identifies a small network of key genes that tune cell mechanics. https://elifesciences.org/reviewed-preprints/87930 #machinelearning #transcriptomics #cancer

elifesciences.orgDe novo identification of universal cell mechanics gene signatures

**Arli A P** @arli@sciencemastodon.com · Nov 28, 2024

Nov 28, 2024

Arli A P @arli@sciencemastodon.com

Greetings to i3L students and all life sciences enthusiasts!

i3L proudly presents another episode of Power Talk!

Special in December 2024 Power Talk, i3L proudly invites an expert: Rizky Nurdiansyah .,M.Si (PhD Candidate at Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT))

We're looking forward to seeing you!
metagenomics #i3L #biotechnology #biomedicine #genomics #transcriptomics

**Haojia Wu** @haojiawu@mastodon.haojia-wu.com · Nov 20, 2024

Nov 20, 2024

Haojia Wu @haojiawu@mastodon.haojia-wu.com

Open-ST: High-resolution spatial transcriptomics in 3D #spatial #transcriptomics #python #newtool
https://www.sciencedirect.com/science/article/pii/S0092867424006366

www.sciencedirect.comOpen-ST: High-resolution spatial transcriptomics in 3DSpatial transcriptomics (ST) methods unlock molecular mechanisms underlying tissue development, homeostasis, or disease. However, there is a need for …

**Alberto Perez-Posada** @apposada@genomic.social · Oct 18, 2024 *

Oct 18, 2024 *

Alberto Perez-Posada @apposada@genomic.social

I am very happy to announce that our work on hemichordate gene expression and chromatin accessibility dynamics is now published on Nature Ecology and Evolution! https://www.nature.com/articles/s41559-024-02562-x

Life cycle of the hemichordate Ptychodera flava showing life stages from egg to adults, represented in a clock-wise manner forming a circle. In the center, a simple schematics of a gene, a nearby region of open chromatin, and a network of transcription factors.

#science #genomics #evolution

**Bgee database** @bgeedb@genomic.social · Oct 3, 2024

Oct 3, 2024

Bgee database @bgeedb@genomic.social

Do you know gget by the Pachter lab? You should! It now includes efficient querying of Bgee in Python. Get high quality curated gene expression data directly in Python or command line. https://pachterlab.github.io/gget/en/bgee.html #RNAseq #biocuration #Python #scRNAseq @SIB @marcrr @fbastian @dee_unil

#bgee #Bioinformatics #RNASequencing

**Albert Cardona** @albertcardona@mathstodon.xyz · Sep 2, 2024

Sep 2, 2024

Albert Cardona @albertcardona@mathstodon.xyz

"Whole-embryo Spatial Transcriptomics at Subcellular Resolution from Gastrulation to Organogenesis", by Wan et al. 2024
https://www.biorxiv.org/content/10.1101/2024.08.27.609868v1

#zebrafish #RNAseq #transcriptomics